Python Module Index

c


	c
	`CodonU`
	`CodonU.analyzer`
	`CodonU.analyzer.aromaticity_comp`
	`CodonU.analyzer.cai_comp`
	`CodonU.analyzer.cbi_comp`
	`CodonU.analyzer.enc_comp`
	`CodonU.analyzer.generate_report`
	`CodonU.analyzer.generate_report_summary`
	`CodonU.analyzer.gravy_comp`
	`CodonU.analyzer.internal_comp`
	`CodonU.analyzer.rscu_comp`
	`CodonU.analyzer.tRNA_comp`
	`CodonU.correspondence_analysis`
	`CodonU.correspondence_analysis.build_contingency_table_aa_count`
	`CodonU.correspondence_analysis.build_contingency_table_codon_count`
	`CodonU.correspondence_analysis.build_contingency_table_codon_rscu`
	`CodonU.correspondence_analysis.ca_aa`
	`CodonU.correspondence_analysis.ca_codon`
	`CodonU.cua_errors`
	`CodonU.cua_errors.bad_seq_err`
	`CodonU.cua_errors.codon_table_exist_err`
	`CodonU.cua_errors.codon_usage_err`
	`CodonU.cua_errors.file_not_empty_err`
	`CodonU.cua_errors.internal_stop_codon_err`
	`CodonU.cua_errors.no_prot_err`
	`CodonU.cua_errors.nucleotide_err`
	`CodonU.cua_errors.ter_seq_err`
	`CodonU.cua_errors.unsupported_db`
	`CodonU.cua_errors.unsupported_type`
	`CodonU.cua_warnings`
	`CodonU.cua_warnings.api_warn`
	`CodonU.cua_warnings.ca_component_warn`
	`CodonU.cua_warnings.codon_usage_warns`
	`CodonU.cua_warnings.email_warn`
	`CodonU.cua_warnings.missing_codon_warn`
	`CodonU.cua_warnings.no_codon_warn`
	`CodonU.cua_warnings.no_syn_codon_warn`
	`CodonU.extractor`
	`CodonU.extractor.extract_cds`
	`CodonU.extractor.extract_cds_lst`
	`CodonU.extractor.extract_exome`
	`CodonU.extractor.extract_prot`
	`CodonU.extractor.internal_comp`
	`CodonU.file_handler`
	`CodonU.file_handler.get_gb`
	`CodonU.file_handler.internal_comp`
	`CodonU.file_handler.make_dir`
	`CodonU.file_handler.read_file`
	`CodonU.file_handler.set_entrez_param`
	`CodonU.file_handler.write_exome_fasta`
	`CodonU.file_handler.write_nucleotide_fasta`
	`CodonU.file_handler.write_protein_fasta`
	`CodonU.phylogenetic_analysis`
	`CodonU.phylogenetic_analysis.clustal_o`
	`CodonU.phylogenetic_analysis.clustal_w`
	`CodonU.phylogenetic_analysis.generate_phylo_input`
	`CodonU.vizualizer`
	`CodonU.vizualizer.plot_ca_aa_freq_aa`
	`CodonU.vizualizer.plot_ca_aa_freq_gene`
	`CodonU.vizualizer.plot_ca_codon_freq_codon`
	`CodonU.vizualizer.plot_ca_codon_freq_gene`
	`CodonU.vizualizer.plot_ca_codon_rscu_codon`
	`CodonU.vizualizer.plot_ca_codon_rscu_gene`
	`CodonU.vizualizer.plot_enc`
	`CodonU.vizualizer.plot_funcs`
	`CodonU.vizualizer.plot_neutrality`
	`CodonU.vizualizer.plot_phy_dnd`
	`CodonU.vizualizer.plot_phy_fas`
	`CodonU.vizualizer.plot_phy_nex`
	`CodonU.vizualizer.plot_pr2`