CodonU.phylogenetic_analysis.clustal_o

Module Contents

Functions

phy_clustal_o(bin_path, handle[, res_folder_path])

Makes the multiple sequence alignment with ClustalO. For details visit http://www.clustal.org/omega

CodonU.phylogenetic_analysis.clustal_o.phy_clustal_o(bin_path: str, handle: str, res_folder_path: str = 'Report')

Makes the multiple sequence alignment with ClustalO. For details visit http://www.clustal.org/omega

Parameters:

• bin_path – Path to the binary file of ClustalO

• handle – Handle to the file, or the filename as a string

• res_folder_path – The path of folder where the file will be saved