CodonU.vizualizer.plot_pr2

Module Contents

Functions

plot_pr2(handle[, min_len_threshold, organism_name, ...])

Plots A3/AT3 values against G3/GC3 values from given fasta file
CodonU.vizualizer.plot_pr2.plot_pr2(handle: str | Any, min_len_threshold: int = 200, organism_name: str | None = None, save_image: bool = False, folder_path: str = 'Report', gene_analysis: bool = True)

Plots A3/AT3 values against G3/GC3 values from given fasta file

Parameters:

  • handle – Handle to the file, or the filename as a string

  • min_len_threshold – Minimum length of nucleotide sequence to be considered as gene

  • organism_name – Name of organism (optional)

  • save_image – Options for saving the image (optional)

  • folder_path – Folder path where image should be saved (optional)

  • gene_analysis – Option if gene analysis (True) or genome analysis (False) (optional)