CodonU.vizualizer.plot_enc

Module Contents

Functions

plot_enc(handle, genetic_table_num[, ...])

Plots ENc curve from given fasta file
CodonU.vizualizer.plot_enc.plot_enc(handle: str | Any, genetic_table_num: int, min_len_threshold: int = 200, organism_name: None | str = None, save_image: bool = False, folder_path: str = 'Report', gene_analysis: bool = True)

Plots ENc curve from given fasta file

Parameters:

  • handle – Handle to the file, or the filename as a string

  • genetic_table_num – Genetic table number for codon table

  • min_len_threshold – Minimum length of nucleotide sequence to be considered as gene

  • organism_name – Name of organism (optional)

  • save_image – Options for saving the image (optional)

  • folder_path – Folder path where image should be saved (optional)

  • gene_analysis – Option if gene analysis (True) or genome analysis (False) (optional)