CodonU.cua_errors
Submodules
CodonU.cua_errors.bad_seq_errCodonU.cua_errors.codon_table_exist_errCodonU.cua_errors.codon_usage_errCodonU.cua_errors.file_not_empty_errCodonU.cua_errors.internal_stop_codon_errCodonU.cua_errors.no_prot_errCodonU.cua_errors.nucleotide_errCodonU.cua_errors.ter_seq_errCodonU.cua_errors.unsupported_dbCodonU.cua_errors.unsupported_type
Package Contents
- exception CodonU.cua_errors.FileNotEmptyError(file_name=None)
Bases:
CodonU.cua_errors.codon_usage_err.CodonUsageErrorOccurs when a given file to write is not empty
- exception CodonU.cua_errors.NoProteinError(seq)
Bases:
CodonU.cua_errors.codon_usage_err.CodonUsageErrorOccurs when a complete category of amino acid based on sf values is not translated by the provided sequence
- exception CodonU.cua_errors.NucleotideError(code)
Bases:
CodonU.cua_errors.codon_usage_err.CodonUsageErrorOccurs when an ambiguous or invalid nucleotide is present in genome
- exception CodonU.cua_errors.InternalStopCodonError(position)
Bases:
CodonU.cua_errors.codon_usage_err.CodonUsageErrorOccurs when internal stop codon is present in the genome
- exception CodonU.cua_errors.TerSeqError(code)
Bases:
CodonU.cua_errors.codon_usage_err.CodonUsageErrorOccurs when terminal codons are not valid
- exception CodonU.cua_errors.UnsupportedType
Bases:
CodonU.cua_errors.codon_usage_err.CodonUsageErrorAccounts for all error that can happen during executing the files
- exception CodonU.cua_errors.CodonTableExistsError(code, val)
Bases:
CodonU.cua_errors.codon_usage_err.CodonUsageErrorOccurs when id, name or alt_name of a new table is same with existing tables
- exception CodonU.cua_errors.BadSequenceError(seq, code)
Bases:
CodonU.cua_errors.codon_usage_err.CodonUsageErrorOccurs when the sequence is bad i.e. length of the sequence is not divisible by 3
- exception CodonU.cua_errors.UnsupportedDatabase
Bases:
CodonU.cua_errors.codon_usage_err.CodonUsageErrorAccounts for all error that can happen during executing the files